IL_4V53_180

3D structure

PDB id

4V53 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of the bacterial ribosome from Escherichia coli in complex with gentamicin.

Experimental method

X-RAY DIFFRACTION

Resolution

3.54 Å

Loop

Sequence

AG*CAU

Length

5 nucleotides

Bulged bases

4V53|1|CA|A|397

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_4V53_180 not in the Motif Atlas

Homologous match to IL_5J7L_002

Geometric discrepancy: 0.0677

The information below is about IL_5J7L_002

Detailed Annotation

Single bulged A

Broad Annotation

No text annotation

Motif group

IL_31462.5

Basepair signature

cWW-L-cWW

Number of instances in this motif group

129

Unit IDs

4V53|1|CA|A|44
4V53|1|CA|G|45
*
4V53|1|CA|C|396
4V53|1|CA|A|397
4V53|1|CA|U|398

Current chains

Chain CA

16S rRNA

Nearby chains

Chain CP

30S ribosomal protein S16