3D structure

PDB id
4V53 (explore in PDB, NAKB, or RNA 3D Hub)
Description
Crystal structure of the bacterial ribosome from Escherichia coli in complex with gentamicin.
Experimental method
X-RAY DIFFRACTION
Resolution
3.54 Å

Loop

Sequence
UGAAGAAG*UGUAAAG
Length
15 nucleotides
Bulged bases
None detected
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
IL_4V53_198 not in the Motif Atlas
Homologous match to IL_4LFB_017
Geometric discrepancy: 0.1954
The information below is about IL_4LFB_017
Detailed Annotation
No text annotation
Broad Annotation
No text annotation
Motif group
IL_28026.3
Basepair signature
cWW-tSH-tWH-cWH-L-tHW-tSS-tHH-cWW
Number of instances in this motif group
2

Unit IDs

4V53|1|CA|U|409
4V53|1|CA|G|410
4V53|1|CA|A|411
4V53|1|CA|A|412
4V53|1|CA|G|413
4V53|1|CA|A|414
4V53|1|CA|A|415
4V53|1|CA|G|416
*
4V53|1|CA|U|427
4V53|1|CA|G|428
4V53|1|CA|U|429
4V53|1|CA|A|430
4V53|1|CA|A|431
4V53|1|CA|A|432
4V53|1|CA|G|433

Current chains

Chain CA
16S rRNA

Nearby chains

Chain BB
Large subunit ribosomal RNA; LSU rRNA
Chain BH
50S ribosomal protein L9
Chain CD
30S ribosomal protein S4

Coloring options:


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