IL_4V53_198

3D structure

PDB id

4V53 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of the bacterial ribosome from Escherichia coli in complex with gentamicin.

Experimental method

X-RAY DIFFRACTION

Resolution

3.54 Å

Loop

Sequence

UGAAGAAG*UGUAAAG

Length

15 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_4V53_198 not in the Motif Atlas

Homologous match to IL_4LFB_017

Geometric discrepancy: 0.1954

The information below is about IL_4LFB_017

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_28026.3

Basepair signature

cWW-tSH-tWH-cWH-L-tHW-tSS-tHH-cWW

Number of instances in this motif group

2

Unit IDs

4V53|1|CA|U|409
4V53|1|CA|G|410
4V53|1|CA|A|411
4V53|1|CA|A|412
4V53|1|CA|G|413
4V53|1|CA|A|414
4V53|1|CA|A|415
4V53|1|CA|G|416
*
4V53|1|CA|U|427
4V53|1|CA|G|428
4V53|1|CA|U|429
4V53|1|CA|A|430
4V53|1|CA|A|431
4V53|1|CA|A|432
4V53|1|CA|G|433

Current chains

Chain CA

16S rRNA

Nearby chains

Chain BB

Large subunit ribosomal RNA; LSU rRNA

Chain BH

50S ribosomal protein L9

Chain CD

30S ribosomal protein S4