IL_4V53_198
3D structure
- PDB id
- 4V53 (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Crystal structure of the bacterial ribosome from Escherichia coli in complex with gentamicin.
- Experimental method
- X-RAY DIFFRACTION
- Resolution
- 3.54 Å
Loop
- Sequence
- UGAAGAAG*UGUAAAG
- Length
- 15 nucleotides
- Bulged bases
- None detected
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_4V53_198 not in the Motif Atlas
- Homologous match to IL_4LFB_017
- Geometric discrepancy: 0.1954
- The information below is about IL_4LFB_017
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- IL_28026.3
- Basepair signature
- cWW-tSH-tWH-cWH-L-tHW-tSS-tHH-cWW
- Number of instances in this motif group
- 2
Unit IDs
4V53|1|CA|U|409
4V53|1|CA|G|410
4V53|1|CA|A|411
4V53|1|CA|A|412
4V53|1|CA|G|413
4V53|1|CA|A|414
4V53|1|CA|A|415
4V53|1|CA|G|416
*
4V53|1|CA|U|427
4V53|1|CA|G|428
4V53|1|CA|U|429
4V53|1|CA|A|430
4V53|1|CA|A|431
4V53|1|CA|A|432
4V53|1|CA|G|433
Current chains
- Chain CA
- 16S rRNA
Nearby chains
- Chain BB
- Large subunit ribosomal RNA; LSU rRNA
- Chain BH
- 50S ribosomal protein L9
- Chain CD
- 30S ribosomal protein S4
Coloring options: