IL_4V53_204

3D structure

PDB id

4V53 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of the bacterial ribosome from Escherichia coli in complex with gentamicin.

Experimental method

X-RAY DIFFRACTION

Resolution

3.54 Å

Loop

Sequence

AAG*CU

Length

5 nucleotides

Bulged bases

4V53|1|CA|A|461

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_4V53_204 not in the Motif Atlas

Geometric match to IL_7VTI_001

Geometric discrepancy: 0.3476

The information below is about IL_7VTI_001

Detailed Annotation

Single bulged A

Broad Annotation

No text annotation

Motif group

IL_31462.6

Basepair signature

cWW-L-cWW

Number of instances in this motif group

130

Unit IDs

4V53|1|CA|A|460
4V53|1|CA|A|461
4V53|1|CA|G|462
*
4V53|1|CA|C|470
4V53|1|CA|U|471

Current chains

Chain CA

16S rRNA

Nearby chains