IL_4V53_260

3D structure

PDB id

4V53 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of the bacterial ribosome from Escherichia coli in complex with gentamicin.

Experimental method

X-RAY DIFFRACTION

Resolution

3.54 Å

Loop

Sequence

CCUGAAUC*GUGAG

Length

13 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_4V53_260 not in the Motif Atlas

Homologous match to IL_5J7L_253

Geometric discrepancy: 0.4711

The information below is about IL_5J7L_253

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_77870.1

Basepair signature

cWW-L-R-L-tHS-L-cWW-L-cWW

Number of instances in this motif group

2

Unit IDs

4V53|1|DB|C|274
4V53|1|DB|C|275
4V53|1|DB|U|276
4V53|1|DB|G|277
4V53|1|DB|A|278
4V53|1|DB|A|279
4V53|1|DB|U|280
4V53|1|DB|C|281
*
4V53|1|DB|G|359
4V53|1|DB|U|360
4V53|1|DB|G|361
4V53|1|DB|A|362
4V53|1|DB|G|363

Current chains

Chain DB

23S rRNA

Nearby chains