IL_4V53_262

3D structure

PDB id

4V53 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of the bacterial ribosome from Escherichia coli in complex with gentamicin.

Experimental method

X-RAY DIFFRACTION

Resolution

3.54 Å

Loop

Sequence

GAAC*GAGUGAAAAAGAAC

Length

18 nucleotides

Bulged bases (A, C, G, U)

504A, 508A

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_4V53_262 not in the Motif Atlas

Homologous match to IL_5J7L_255

Geometric discrepancy: 0.093

The information below is about IL_5J7L_255

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_60992.7

Basepair signature

cWW-cWS-tSH-L-tHH-tWH-cWW-tSS-tSH-L-L

Number of instances in this motif group

6

Unit IDs

4V53|1|DB|G|481
4V53|1|DB|A|482
4V53|1|DB|A|483
4V53|1|DB|C|484
*
4V53|1|DB|G|496
4V53|1|DB|A|497
4V53|1|DB|G|498
4V53|1|DB|U|499
4V53|1|DB|G|500
4V53|1|DB|A|501
4V53|1|DB|A|502
4V53|1|DB|A|503
4V53|1|DB|A|504
4V53|1|DB|A|505
4V53|1|DB|G|506
4V53|1|DB|A|507
4V53|1|DB|A|508
4V53|1|DB|C|509

Current chains

Chain DB

23S rRNA

Nearby chains

Chain DS

50S ribosomal protein L22

Chain DU

50S ribosomal protein L24