IL_4V53_263

3D structure

PDB id

4V53 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of the bacterial ribosome from Escherichia coli in complex with gentamicin.

Experimental method

X-RAY DIFFRACTION

Resolution

3.54 Å

Loop

Sequence

GGAG*UGAC

Length

8 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_4V53_263 not in the Motif Atlas

Homologous match to IL_5J7L_256

Geometric discrepancy: 0.1011

The information below is about IL_5J7L_256

Detailed Annotation

Double sheared

Broad Annotation

Double sheared

Motif group

IL_09705.15

Basepair signature

cWW-tSH-tHS-cWW

Number of instances in this motif group

34

Unit IDs

4V53|1|DB|G|536
4V53|1|DB|G|537
4V53|1|DB|A|538
4V53|1|DB|G|539
*
4V53|1|DB|U|554
4V53|1|DB|G|555
4V53|1|DB|A|556
4V53|1|DB|C|557

Current chains

Chain DB

23S rRNA

Nearby chains

Chain DJ

50S ribosomal protein L13

Chain DQ

50S ribosomal protein L20