IL_4V53_268
3D structure
- PDB id
- 4V53 (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Crystal structure of the bacterial ribosome from Escherichia coli in complex with gentamicin.
- Experimental method
- X-RAY DIFFRACTION
- Resolution
- 3.54 Å
Loop
- Sequence
- GC*GAC
- Length
- 5 nucleotides
- Bulged bases (A, C, G, U)
- 764A
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_4V53_268 not in the Motif Atlas
- Geometric match to IL_5J7L_261
- Geometric discrepancy: 0.0785
- The information below is about IL_5J7L_261
- Detailed Annotation
- Single bulged A
- Broad Annotation
- No text annotation
- Motif group
- IL_37497.7
- Basepair signature
- cWW-L-cWW
- Number of instances in this motif group
- 120
Unit IDs
4V53|1|DB|G|697
4V53|1|DB|C|698
*
4V53|1|DB|G|763
4V53|1|DB|A|764
4V53|1|DB|C|765
Current chains
- Chain DB
- 23S rRNA
Nearby chains
- Chain DC
- 50S ribosomal protein L2
Coloring options: