IL_4V53_286
3D structure
- PDB id
- 4V53 (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Crystal structure of the bacterial ribosome from Escherichia coli in complex with gentamicin.
- Experimental method
- X-RAY DIFFRACTION
- Resolution
- 3.54 Å
Loop
- Sequence
- GGGAAAC*GGAAGAUGUAACGGGGC
- Length
- 24 nucleotides
- Bulged bases
- 4V53|1|DB|A|1127, 4V53|1|DB|U|1130
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_4V53_286 not in the Motif Atlas
- Geometric match to IL_5J7L_281
- Geometric discrepancy: 0.0672
- The information below is about IL_5J7L_281
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- IL_50715.3
- Basepair signature
- cWW-tSH-tHH-L-R-L-R-L-tWW-L-cWW-L-L-L-R-L
- Number of instances in this motif group
- 4
Unit IDs
4V53|1|DB|G|1024
4V53|1|DB|G|1025
4V53|1|DB|G|1026
4V53|1|DB|A|1027
4V53|1|DB|A|1028
4V53|1|DB|A|1029
4V53|1|DB|C|1030
*
4V53|1|DB|G|1124
4V53|1|DB|G|1125
4V53|1|DB|A|1126
4V53|1|DB|A|1127
4V53|1|DB|G|1128
4V53|1|DB|A|1129
4V53|1|DB|U|1130
4V53|1|DB|G|1131
4V53|1|DB|U|1132
4V53|1|DB|A|1133
4V53|1|DB|A|1134
4V53|1|DB|C|1135
4V53|1|DB|G|1136
4V53|1|DB|G|1137
4V53|1|DB|G|1138
4V53|1|DB|G|1139
4V53|1|DB|C|1140
Current chains
- Chain DB
- 23S rRNA
Nearby chains
- Chain D4
- 50S ribosomal protein L36
- Chain DA
- 5S ribosomal RNA; 5S rRNA
- Chain DD
- 50S ribosomal protein L3
- Chain DJ
- 50S ribosomal protein L13
- Chain DM
- 50S ribosomal protein L16
Coloring options: