IL_4V53_330

3D structure

PDB id

4V53 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of the bacterial ribosome from Escherichia coli in complex with gentamicin.

Experimental method

X-RAY DIFFRACTION

Resolution

3.54 Å

Loop

Sequence

UUG*CUG

Length

6 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_4V53_330 not in the Motif Atlas

Homologous match to IL_7RQB_083

Geometric discrepancy: 0.0617

The information below is about IL_7RQB_083

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_86319.2

Basepair signature

cWW-cWW-cWW

Number of instances in this motif group

270

Unit IDs

4V53|1|DB|U|2085
4V53|1|DB|U|2086
4V53|1|DB|G|2087
*
4V53|1|DB|C|2232
4V53|1|DB|U|2233
4V53|1|DB|G|2234

Current chains

Chain DB

23S rRNA

Nearby chains

Chain DC

50S ribosomal protein L2

Chain DZ

50S ribosomal protein L28