IL_4V53_340

3D structure

PDB id

4V53 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of the bacterial ribosome from Escherichia coli in complex with gentamicin.

Experimental method

X-RAY DIFFRACTION

Resolution

3.54 Å

Loop

Sequence

CCAAG*CGACG

Length

10 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_4V53_340 not in the Motif Atlas

Homologous match to IL_5J7L_338

Geometric discrepancy: 0.0846

The information below is about IL_5J7L_338

Detailed Annotation

Triple sheared

Broad Annotation

No text annotation

Motif group

IL_17948.2

Basepair signature

cWW-L-R-tSH-tHS-cWW

Number of instances in this motif group

13

Unit IDs

4V53|1|DB|C|2466
4V53|1|DB|C|2467
4V53|1|DB|A|2468
4V53|1|DB|A|2469
4V53|1|DB|G|2470
*
4V53|1|DB|C|2480
4V53|1|DB|G|2481
4V53|1|DB|A|2482
4V53|1|DB|C|2483
4V53|1|DB|G|2484

Current chains

Chain DB

23S rRNA

Nearby chains

Chain D4

50S ribosomal protein L36

Chain DM

50S ribosomal protein L16