IL_4V53_343

3D structure

PDB id

4V53 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of the bacterial ribosome from Escherichia coli in complex with gentamicin.

Experimental method

X-RAY DIFFRACTION

Resolution

3.54 Å

Loop

Sequence

CA*UACG

Length

6 nucleotides

Bulged bases

4V53|1|DB|A|2572, 4V53|1|DB|C|2573

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_4V53_343 not in the Motif Atlas

Geometric match to IL_5J7L_341

Geometric discrepancy: 0.1059

The information below is about IL_5J7L_341

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_42626.2

Basepair signature

cWW-cWW

Number of instances in this motif group

14

Unit IDs

4V53|1|DB|C|2512
4V53|1|DB|A|2513
*
4V53|1|DB|U|2571
4V53|1|DB|A|2572
4V53|1|DB|C|2573
4V53|1|DB|G|2574

Current chains

Chain DB

23S rRNA

Nearby chains

Chain DD

50S ribosomal protein L3

Chain DJ

50S ribosomal protein L13