IL_4V54_146

3D structure

PDB id

4V54 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of the bacterial ribosome from Escherichia coli in complex with ribosome recycling factor (RRF).

Experimental method

X-RAY DIFFRACTION

Resolution

3.3 Å

Loop

Sequence

CGAAAUUCCUUG*CCUG

Length

16 nucleotides

Bulged bases

4V54|1|BB|A|1938, 4V54|1|BB|U|1944, 4V54|1|BB|U|1963

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_4V54_146 not in the Motif Atlas

Homologous match to IL_7A0S_072

Geometric discrepancy: 0.1387

The information below is about IL_7A0S_072

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_04332.3

Basepair signature

cWW-L-R-L-cWW-L-L-R-L-R-L

Number of instances in this motif group

2

Unit IDs

4V54|1|BB|C|1934
4V54|1|BB|G|1935
4V54|1|BB|A|1936
4V54|1|BB|A|1937
4V54|1|BB|A|1938
4V54|1|BB|U|1939
4V54|1|BB|U|1940
4V54|1|BB|C|1941
4V54|1|BB|C|1942
4V54|1|BB|U|1943
4V54|1|BB|U|1944
4V54|1|BB|G|1945
*
4V54|1|BB|C|1961
4V54|1|BB|C|1962
4V54|1|BB|U|1963
4V54|1|BB|G|1964

Current chains

Chain BB

23S rRNA

Nearby chains

Chain AA

Small subunit ribosomal RNA; SSU rRNA

Chain B6

ribosome recycling factor

Chain BC

50S ribosomal protein L2