IL_4V54_295

3D structure

PDB id

4V54 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of the bacterial ribosome from Escherichia coli in complex with ribosome recycling factor (RRF).

Experimental method

X-RAY DIFFRACTION

Resolution

3.3 Å

Loop

Sequence

AUAAGUAA*UGAAAUU

Length

15 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_4V54_295 not in the Motif Atlas

Homologous match to IL_5J7L_289

Geometric discrepancy: 0.06

The information below is about IL_5J7L_289

Detailed Annotation

8x7 Sarcin-Ricin; G-bulge

Broad Annotation

Sarcin-Ricin; G-bulge

Motif group

IL_04346.10

Basepair signature

cWW-cWW-tSH-tHH-cSH-tWH-tHS-cWW

Number of instances in this motif group

15

Unit IDs

4V54|1|DB|A|1262
4V54|1|DB|U|1263
4V54|1|DB|A|1264
4V54|1|DB|A|1265
4V54|1|DB|G|1266
4V54|1|DB|U|1267
4V54|1|DB|A|1268
4V54|1|DB|A|1269
*
4V54|1|DB|U|2011
4V54|1|DB|G|2012
4V54|1|DB|A|2013
4V54|1|DB|A|2014
4V54|1|DB|A|2015
4V54|1|DB|U|2016
4V54|1|DB|U|2017

Current chains

Chain DB

23S rRNA

Nearby chains

Chain D0

50S ribosomal protein L32

Chain DE

50S ribosomal protein L4

Chain DS

50S ribosomal protein L22