IL_4V54_314

3D structure

PDB id

4V54 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of the bacterial ribosome from Escherichia coli in complex with ribosome recycling factor (RRF).

Experimental method

X-RAY DIFFRACTION

Resolution

3.3 Å

Loop

Sequence

UAUGUAG*UGAAA

Length

12 nucleotides

Bulged bases

4V54|1|DB|U|1714

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_4V54_314 not in the Motif Atlas

Homologous match to IL_5J7L_309

Geometric discrepancy: 0.165

The information below is about IL_5J7L_309

Detailed Annotation

6x5 Sarcin-Ricin; G-bulge

Broad Annotation

Sarcin-Ricin; G-bulge

Motif group

IL_88269.4

Basepair signature

cWW-tWW-cSH-tWH-tHS-cWW

Number of instances in this motif group

3

Unit IDs

4V54|1|DB|U|1712
4V54|1|DB|A|1713
4V54|1|DB|U|1714
4V54|1|DB|G|1715
4V54|1|DB|U|1716
4V54|1|DB|A|1717
4V54|1|DB|G|1718
*
4V54|1|DB|U|1742
4V54|1|DB|G|1743
4V54|1|DB|A|1744
4V54|1|DB|A|1745
4V54|1|DB|A|1746

Current chains

Chain DB

23S rRNA

Nearby chains