IL_4V55_144

3D structure

PDB id

4V55 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of the bacterial ribosome from Escherichia coli in complex with gentamicin and ribosome recycling factor (RRF).

Experimental method

X-RAY DIFFRACTION

Resolution

4 Å

Loop

Sequence

UUAG*CGAAG

Length

9 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_4V55_144 not in the Motif Atlas

Homologous match to IL_5J7L_317

Geometric discrepancy: 0.1817

The information below is about IL_5J7L_317

Detailed Annotation

UAA/GAN related

Broad Annotation

No text annotation

Motif group

IL_77691.5

Basepair signature

cWW-tSH-L-R-L-cWW

Number of instances in this motif group

7

Unit IDs

4V55|1|BB|U|1864
4V55|1|BB|U|1865
4V55|1|BB|A|1866
4V55|1|BB|G|1867
*
4V55|1|BB|C|1874
4V55|1|BB|G|1875
4V55|1|BB|A|1876
4V55|1|BB|A|1877
4V55|1|BB|G|1878

Current chains

Chain BB

23S rRNA

Nearby chains