IL_4V55_148

3D structure

PDB id

4V55 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of the bacterial ribosome from Escherichia coli in complex with gentamicin and ribosome recycling factor (RRF).

Experimental method

X-RAY DIFFRACTION

Resolution

4 Å

Loop

Sequence

ACG*CUAU

Length

7 nucleotides

Bulged bases

4V55|1|BB|C|2055, 4V55|1|BB|U|2613

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_4V55_148 not in the Motif Atlas

Geometric match to IL_5TBW_092

Geometric discrepancy: 0.3858

The information below is about IL_5TBW_092

Detailed Annotation

Major groove platform with intercalation

Broad Annotation

Major groove platform

Motif group

IL_54678.7

Basepair signature

cWW-cWW-cWW

Number of instances in this motif group

5

Unit IDs

4V55|1|BB|A|2054
4V55|1|BB|C|2055
4V55|1|BB|G|2056
*
4V55|1|BB|C|2612
4V55|1|BB|U|2613
4V55|1|BB|A|2614
4V55|1|BB|U|2615

Current chains

Chain BB

23S rRNA

Nearby chains

Chain B0

50S ribosomal protein L32

Chain BD

50S ribosomal protein L3

Chain BS

50S ribosomal protein L22