IL_4V55_175

3D structure

PDB id

4V55 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of the bacterial ribosome from Escherichia coli in complex with gentamicin and ribosome recycling factor (RRF).

Experimental method

X-RAY DIFFRACTION

Resolution

4 Å

Loop

Sequence

CUGAAG*CGUG

Length

10 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_4V55_175 not in the Motif Atlas

Geometric match to IL_5J7L_351

Geometric discrepancy: 0.1182

The information below is about IL_5J7L_351

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_29471.1

Basepair signature

cWW-cWW-L-tHS-L-cWW

Number of instances in this motif group

1

Unit IDs

4V55|1|BB|C|2806
4V55|1|BB|U|2807
4V55|1|BB|G|2808
4V55|1|BB|A|2809
4V55|1|BB|A|2810
4V55|1|BB|G|2811
*
4V55|1|BB|C|2889
4V55|1|BB|G|2890
4V55|1|BB|U|2891
4V55|1|BB|G|2892

Current chains

Chain BB

23S rRNA

Nearby chains

Chain B0

50S ribosomal protein L32

Chain BD

50S ribosomal protein L3