IL_4V55_198

3D structure

PDB id

4V55 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of the bacterial ribosome from Escherichia coli in complex with gentamicin and ribosome recycling factor (RRF).

Experimental method

X-RAY DIFFRACTION

Resolution

4 Å

Loop

Sequence

UGAAGAAG*UGUAAAG

Length

15 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_4V55_198 not in the Motif Atlas

Homologous match to IL_4LFB_017

Geometric discrepancy: 0.1905

The information below is about IL_4LFB_017

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_62329.1

Basepair signature

cWW-tSH-tWH-cWH-L-tHW-tSS-tHH-cWW

Number of instances in this motif group

2

Unit IDs

4V55|1|CA|U|409
4V55|1|CA|G|410
4V55|1|CA|A|411
4V55|1|CA|A|412
4V55|1|CA|G|413
4V55|1|CA|A|414
4V55|1|CA|A|415
4V55|1|CA|G|416
*
4V55|1|CA|U|427
4V55|1|CA|G|428
4V55|1|CA|U|429
4V55|1|CA|A|430
4V55|1|CA|A|431
4V55|1|CA|A|432
4V55|1|CA|G|433

Current chains

Chain CA

16S rRNA

Nearby chains

Chain BB

Large subunit ribosomal RNA; LSU rRNA

Chain BH

50S ribosomal protein L9

Chain CD

30S ribosomal protein S4