IL_4V56_273

3D structure

PDB id

4V56 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of the bacterial ribosome from Escherichia coli in complex with spectinomycin.

Experimental method

X-RAY DIFFRACTION

Resolution

3.93 Å

Loop

Sequence

AAUUC*GUUAU

Length

10 nucleotides

Bulged bases

4V56|1|DB|U|846, 4V56|1|DB|U|931

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_4V56_273 not in the Motif Atlas

Homologous match to IL_5J7L_399

Geometric discrepancy: 0.5662

The information below is about IL_5J7L_399

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_96236.1

Basepair signature

cWW-tWW-cWW-L-cWW

Number of instances in this motif group

1

Unit IDs

4V56|1|DB|A|844
4V56|1|DB|A|845
4V56|1|DB|U|846
4V56|1|DB|U|847
4V56|1|DB|C|848
*
4V56|1|DB|G|930
4V56|1|DB|U|931
4V56|1|DB|U|932
4V56|1|DB|A|933
4V56|1|DB|U|934

Current chains

Chain DB

23S rRNA

Nearby chains

Chain DY

50S ribosomal protein L30