IL_4V57_082

3D structure

PDB id

4V57 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of the bacterial ribosome from Escherichia coli in complex with spectinomycin and neomycin.

Experimental method

X-RAY DIFFRACTION

Resolution

3.5 Å

Loop

Sequence

CCUGAAUC*GUGAG

Length

13 nucleotides

Bulged bases

4V57|1|BB|G|277

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_4V57_082 not in the Motif Atlas

Homologous match to IL_5J7L_253

Geometric discrepancy: 0.3041

The information below is about IL_5J7L_253

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_77870.1

Basepair signature

cWW-L-R-L-tHS-L-cWW-L-cWW

Number of instances in this motif group

2

Unit IDs

4V57|1|BB|C|274
4V57|1|BB|C|275
4V57|1|BB|U|276
4V57|1|BB|G|277
4V57|1|BB|A|278
4V57|1|BB|A|279
4V57|1|BB|U|280
4V57|1|BB|C|281
*
4V57|1|BB|G|359
4V57|1|BB|U|360
4V57|1|BB|G|361
4V57|1|BB|A|362
4V57|1|BB|G|363

Current chains

Chain BB

23S rRNA

Nearby chains