IL_4V57_086

3D structure

PDB id

4V57 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of the bacterial ribosome from Escherichia coli in complex with spectinomycin and neomycin.

Experimental method

X-RAY DIFFRACTION

Resolution

3.5 Å

Loop

Sequence

CCU*AUG

Length

6 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_4V57_086 not in the Motif Atlas

Geometric match to IL_4WF9_017

Geometric discrepancy: 0.0956

The information below is about IL_4WF9_017

Detailed Annotation

Isolated non-canonical cWW pair

Broad Annotation

No text annotation

Motif group

IL_71625.1

Basepair signature

cWW-cWW-cWW

Number of instances in this motif group

65

Unit IDs

4V57|1|BB|C|564
4V57|1|BB|C|565
4V57|1|BB|U|566
*
4V57|1|BB|A|575
4V57|1|BB|U|576
4V57|1|BB|G|577

Current chains

Chain BB

23S rRNA

Nearby chains

Chain BE

50S ribosomal protein L4

Chain BL

50S ribosomal protein L15

Chain BQ

50S ribosomal protein L20

Chain BR

50S ribosomal protein L21