3D structure

PDB id
4V57 (explore in PDB, NAKB, or RNA 3D Hub)
Description
Crystal structure of the bacterial ribosome from Escherichia coli in complex with spectinomycin and neomycin.
Experimental method
X-RAY DIFFRACTION
Resolution
3.5 Å

Loop

Sequence
CCU*AUG
Length
6 nucleotides
Bulged bases
None detected
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
IL_4V57_086 not in the Motif Atlas
Geometric match to IL_4WF9_017
Geometric discrepancy: 0.0956
The information below is about IL_4WF9_017
Detailed Annotation
Isolated non-canonical cWW pair
Broad Annotation
No text annotation
Motif group
IL_07785.1
Basepair signature
cWW-cWW-cWW
Number of instances in this motif group
33

Unit IDs

4V57|1|BB|C|564
4V57|1|BB|C|565
4V57|1|BB|U|566
*
4V57|1|BB|A|575
4V57|1|BB|U|576
4V57|1|BB|G|577

Current chains

Chain BB
23S rRNA

Nearby chains

Chain BE
50S ribosomal protein L4
Chain BL
50S ribosomal protein L15
Chain BQ
50S ribosomal protein L20
Chain BR
50S ribosomal protein L21

Coloring options:


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