IL_4V57_113

3D structure

PDB id

4V57 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of the bacterial ribosome from Escherichia coli in complex with spectinomycin and neomycin.

Experimental method

X-RAY DIFFRACTION

Resolution

3.5 Å

Loop

Sequence

GAAA*UC

Length

6 nucleotides

Bulged bases

4V57|1|BB|A|1088

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_4V57_113 not in the Motif Atlas

Homologous match to IL_6PRV_002

Geometric discrepancy: 0.2777

The information below is about IL_6PRV_002

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

4V57|1|BB|G|1087
4V57|1|BB|A|1088
4V57|1|BB|A|1089
4V57|1|BB|A|1090
*
4V57|1|BB|U|1101
4V57|1|BB|C|1102

Current chains

Chain BB

23S rRNA

Nearby chains

Chain B4

50S ribosomal protein L36

Chain BI

50S ribosomal protein L11