IL_4V57_172

3D structure

PDB id

4V57 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of the bacterial ribosome from Escherichia coli in complex with spectinomycin and neomycin.

Experimental method

X-RAY DIFFRACTION

Resolution

3.5 Å

Loop

Sequence

UU*ACUG

Length

6 nucleotides

Bulged bases

4V57|1|BB|C|2712, 4V57|1|BB|U|2713

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_4V57_172 not in the Motif Atlas

Homologous match to IL_5J7L_349

Geometric discrepancy: 0.087

The information below is about IL_5J7L_349

Detailed Annotation

Multiple bulged bases

Broad Annotation

No text annotation

Motif group

IL_24807.1

Basepair signature

cWW-cWW

Number of instances in this motif group

17

Unit IDs

4V57|1|BB|U|2695
4V57|1|BB|U|2696
*
4V57|1|BB|A|2711
4V57|1|BB|C|2712
4V57|1|BB|U|2713
4V57|1|BB|G|2714

Current chains

Chain BB

23S rRNA

Nearby chains

Chain BN

50S ribosomal protein L17

Chain BP

50S ribosomal protein L19