IL_4V57_199

3D structure

PDB id

4V57 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of the bacterial ribosome from Escherichia coli in complex with spectinomycin and neomycin.

Experimental method

X-RAY DIFFRACTION

Resolution

3.5 Å

Loop

Sequence

GGAGG*CGUUAC

Length

11 nucleotides

Bulged bases

4V57|1|CA|U|485

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_4V57_199 not in the Motif Atlas

Homologous match to IL_5J7L_022

Geometric discrepancy: 0.0761

The information below is about IL_5J7L_022

Detailed Annotation

tSH-tHW-tWW

Broad Annotation

No text annotation

Motif group

IL_88269.4

Basepair signature

cWW-tWW-cSH-tWH-tHS-cWW

Number of instances in this motif group

3

Unit IDs

4V57|1|CA|G|446
4V57|1|CA|G|447
4V57|1|CA|A|448
4V57|1|CA|G|449
4V57|1|CA|G|450
*
4V57|1|CA|C|483
4V57|1|CA|G|484
4V57|1|CA|U|485
4V57|1|CA|U|486
4V57|1|CA|A|487
4V57|1|CA|C|488

Current chains

Chain CA

16S rRNA

Nearby chains

Chain CD

30S ribosomal protein S4

Chain CP

30S ribosomal protein S16