IL_4V5C_018

3D structure

PDB id

4V5C (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the Thermus thermophilus 70S ribosome in complex with mRNA, paromomycin, acylated A-site tRNA, deacylated P-site tRNA, and E-site tRNA.

Experimental method

X-RAY DIFFRACTION

Resolution

3.3 Å

Loop

Sequence

GGACG*CGGUAC

Length

11 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_4V5C_018 not in the Motif Atlas

Homologous match to IL_4LFB_018

Geometric discrepancy: 0.1668

The information below is about IL_4LFB_018

Detailed Annotation

6x5 Sarcin-Ricin; G-bulge

Broad Annotation

Sarcin-Ricin; G-bulge

Motif group

IL_88269.4

Basepair signature

cWW-tWW-cSH-tWH-tHS-cWW

Number of instances in this motif group

3

Unit IDs

4V5C|1|AA|G|446
4V5C|1|AA|G|447
4V5C|1|AA|A|448
4V5C|1|AA|C|449
4V5C|1|AA|G|450
*
4V5C|1|AA|C|483
4V5C|1|AA|G|484
4V5C|1|AA|G|485
4V5C|1|AA|U|486
4V5C|1|AA|A|487
4V5C|1|AA|C|488

Current chains

Chain AA

16S ribosomal RNA

Nearby chains

Chain AD

30S RIBOSOMAL PROTEIN S4

Chain AP

30S RIBOSOMAL PROTEIN S16

Chain DI

50S RIBOSOMAL PROTEIN L9