3D structure

PDB id
4V5C (explore in PDB, NAKB, or RNA 3D Hub)
Description
Structure of the Thermus thermophilus 70S ribosome in complex with mRNA, paromomycin, acylated A-site tRNA, deacylated P-site tRNA, and E-site tRNA.
Experimental method
X-RAY DIFFRACTION
Resolution
3.3 Å

Loop

Sequence
UAGGGAACC*GGGUGCCCCGCGAGGGGAGCCCUA
Length
33 nucleotides
Bulged bases
None detected
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
Detailed Annotation
No text annotation
Broad Annotation
No text annotation
Motif group
Not in a motif group
Basepair signature
Not available
Number of instances in this motif group
0

Unit IDs

4V5C|1|AA|U|1000
4V5C|1|AA|A|1001
4V5C|1|AA|G|1001|||A
4V5C|1|AA|G|1002
4V5C|1|AA|G|1003
4V5C|1|AA|A|1004
4V5C|1|AA|A|1005
4V5C|1|AA|C|1006
4V5C|1|AA|C|1007
*
4V5C|1|AA|G|1022
4V5C|1|AA|G|1023
4V5C|1|AA|G|1024
4V5C|1|AA|U|1025
4V5C|1|AA|G|1026
4V5C|1|AA|C|1027
4V5C|1|AA|C|1028
4V5C|1|AA|C|1029
4V5C|1|AA|C|1030
4V5C|1|AA|G|1030|||A
4V5C|1|AA|C|1030|||B
4V5C|1|AA|G|1030|||C
4V5C|1|AA|A|1030|||D
4V5C|1|AA|G|1031
4V5C|1|AA|G|1032
4V5C|1|AA|G|1033
4V5C|1|AA|G|1034
4V5C|1|AA|A|1035
4V5C|1|AA|G|1036
4V5C|1|AA|C|1037
4V5C|1|AA|C|1038
4V5C|1|AA|C|1039
4V5C|1|AA|U|1040
4V5C|1|AA|A|1041

Current chains

Chain AA
16S ribosomal RNA

Nearby chains

Chain DA
Large subunit ribosomal RNA; LSU rRNA

Coloring options:

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