IL_4V5C_063
3D structure
- PDB id
- 4V5C (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Structure of the Thermus thermophilus 70S ribosome in complex with mRNA, paromomycin, acylated A-site tRNA, deacylated P-site tRNA, and E-site tRNA.
- Experimental method
- X-RAY DIFFRACTION
- Resolution
- 3.3 Å
Loop
- Sequence
- GGGAG*CGUGGAUC
- Length
- 13 nucleotides
- Bulged bases
- 4V5C|1|BA|G|100
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_4V5C_063 not in the Motif Atlas
- Homologous match to IL_7RQB_004
- Geometric discrepancy: 0.1004
- The information below is about IL_7RQB_004
- Detailed Annotation
- Kink-turn
- Broad Annotation
- No text annotation
- Motif group
- IL_45067.2
- Basepair signature
- cWW-tSS-L-tSH-L-R-R-cWW-L
- Number of instances in this motif group
- 18
Unit IDs
4V5C|1|BA|G|81
4V5C|1|BA|G|82
4V5C|1|BA|G|83
4V5C|1|BA|A|84
4V5C|1|BA|G|85
*
4V5C|1|BA|C|97
4V5C|1|BA|G|98
4V5C|1|BA|U|99
4V5C|1|BA|G|100
4V5C|1|BA|G|102
4V5C|1|BA|A|103
4V5C|1|BA|U|104
4V5C|1|BA|C|105
Current chains
- Chain BA
- 23S Ribosomal RNA
Nearby chains
- Chain B2
- 50S RIBOSOMAL PROTEIN L29
- Chain BY
- 50S RIBOSOMAL PROTEIN L24
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