IL_4V5C_065

3D structure

PDB id

4V5C (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the Thermus thermophilus 70S ribosome in complex with mRNA, paromomycin, acylated A-site tRNA, deacylated P-site tRNA, and E-site tRNA.

Experimental method

X-RAY DIFFRACTION

Resolution

3.3 Å

Loop

Sequence

GGAACUG*CUCAGUAC

Length

15 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_4V5C_065 not in the Motif Atlas

Homologous match to IL_7RQB_006

Geometric discrepancy: 0.0526

The information below is about IL_7RQB_006

Detailed Annotation

8x7 Sarcin-Ricin; G-bulge

Broad Annotation

Sarcin-Ricin; G-bulge

Motif group

IL_04346.7

Basepair signature

cWW-cWW-tSH-tHH-cSH-tWH-tHS-cWW

Number of instances in this motif group

15

Unit IDs

4V5C|1|BA|G|188
4V5C|1|BA|G|189
4V5C|1|BA|A|190
4V5C|1|BA|A|191
4V5C|1|BA|C|192
4V5C|1|BA|U|193
4V5C|1|BA|G|194
*
4V5C|1|BA|C|201
4V5C|1|BA|U|202
4V5C|1|BA|C|203
4V5C|1|BA|A|204
4V5C|1|BA|G|205
4V5C|1|BA|U|206
4V5C|1|BA|A|207
4V5C|1|BA|C|208

Current chains

Chain BA

23S Ribosomal RNA

Nearby chains

Chain B1

50S RIBOSOMAL PROTEIN L28

Chain B7

50S RIBOSOMAL PROTEIN L34

Chain B8

50S RIBOSOMAL PROTEIN L35

Chain BP

50S RIBOSOMAL PROTEIN L15