IL_4V5C_106

3D structure

PDB id

4V5C (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the Thermus thermophilus 70S ribosome in complex with mRNA, paromomycin, acylated A-site tRNA, deacylated P-site tRNA, and E-site tRNA.

Experimental method

X-RAY DIFFRACTION

Resolution

3.3 Å

Loop

Sequence

UGAAG*CGUAG

Length

10 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_4V5C_106 not in the Motif Atlas

Homologous match to IL_4WF9_052

Geometric discrepancy: 0.2271

The information below is about IL_4WF9_052

Detailed Annotation

tSH-tHW-tHS

Broad Annotation

No text annotation

Motif group

IL_05821.1

Basepair signature

cWW-tSH-tHW-tHS-cWW

Number of instances in this motif group

17

Unit IDs

4V5C|1|BA|U|1357
4V5C|1|BA|G|1358
4V5C|1|BA|A|1359
4V5C|1|BA|A|1360
4V5C|1|BA|G|1361
*
4V5C|1|BA|C|1370
4V5C|1|BA|G|1371
4V5C|1|BA|U|1372
4V5C|1|BA|A|1373
4V5C|1|BA|G|1374

Current chains

Chain BA

23S Ribosomal RNA

Nearby chains

Chain B1

50S RIBOSOMAL PROTEIN L28

Chain B7

50S RIBOSOMAL PROTEIN L34

Chain BD

50S RIBOSOMAL PROTEIN L2