IL_4V5C_108

3D structure

PDB id

4V5C (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the Thermus thermophilus 70S ribosome in complex with mRNA, paromomycin, acylated A-site tRNA, deacylated P-site tRNA, and E-site tRNA.

Experimental method

X-RAY DIFFRACTION

Resolution

3.3 Å

Loop

Sequence

CGAUG*CUAAG

Length

10 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_4V5C_108 not in the Motif Atlas

Homologous match to IL_5J7L_295

Geometric discrepancy: 0.1105

The information below is about IL_5J7L_295

Detailed Annotation

UAA/GAN

Broad Annotation

No text annotation

Motif group

IL_38507.2

Basepair signature

cWW-tWH-L-tHS-cWW

Number of instances in this motif group

16

Unit IDs

4V5C|1|BA|C|1417
4V5C|1|BA|G|1418
4V5C|1|BA|A|1419
4V5C|1|BA|U|1420
4V5C|1|BA|G|1421
*
4V5C|1|BA|C|1577
4V5C|1|BA|U|1578
4V5C|1|BA|A|1579
4V5C|1|BA|A|1580
4V5C|1|BA|G|1581

Current chains

Chain BA

23S Ribosomal RNA

Nearby chains