IL_4V5C_140

3D structure

PDB id

4V5C (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the Thermus thermophilus 70S ribosome in complex with mRNA, paromomycin, acylated A-site tRNA, deacylated P-site tRNA, and E-site tRNA.

Experimental method

X-RAY DIFFRACTION

Resolution

3.3 Å

Loop

Sequence

CGAG*CGAG

Length

8 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_4V5C_140 not in the Motif Atlas

Homologous match to IL_7RQB_089

Geometric discrepancy: 0.098

The information below is about IL_7RQB_089

Detailed Annotation

Double sheared

Broad Annotation

Double sheared

Motif group

IL_09705.10

Basepair signature

cWW-tSH-tHS-cWW

Number of instances in this motif group

33

Unit IDs

4V5C|1|BA|C|2350
4V5C|1|BA|G|2351
4V5C|1|BA|A|2352
4V5C|1|BA|G|2353
*
4V5C|1|BA|C|2364
4V5C|1|BA|G|2365
4V5C|1|BA|A|2366
4V5C|1|BA|G|2367

Current chains

Chain BA

23S Ribosomal RNA

Nearby chains

Chain B0

50S RIBOSOMAL PROTEIN L27

Chain B6

50S RIBOSOMAL PROTEIN L33

Chain B8

50S RIBOSOMAL PROTEIN L35