IL_4V5C_182

3D structure

PDB id

4V5C (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the Thermus thermophilus 70S ribosome in complex with mRNA, paromomycin, acylated A-site tRNA, deacylated P-site tRNA, and E-site tRNA.

Experimental method

X-RAY DIFFRACTION

Resolution

3.3 Å

Loop

Sequence

GGAAGAAG*UGUAAAC

Length

15 nucleotides

Bulged bases

4V5C|1|CA|A|412

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_4V5C_182 not in the Motif Atlas

Homologous match to IL_4LFB_017

Geometric discrepancy: 0.1057

The information below is about IL_4LFB_017

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_62329.1

Basepair signature

cWW-tSH-tWH-cWH-L-tHW-tSS-tHH-cWW

Number of instances in this motif group

2

Unit IDs

4V5C|1|CA|G|409
4V5C|1|CA|G|410
4V5C|1|CA|A|411
4V5C|1|CA|A|412
4V5C|1|CA|G|413
4V5C|1|CA|A|414
4V5C|1|CA|A|415
4V5C|1|CA|G|416
*
4V5C|1|CA|U|427
4V5C|1|CA|G|428
4V5C|1|CA|U|429
4V5C|1|CA|A|430
4V5C|1|CA|A|431
4V5C|1|CA|A|432
4V5C|1|CA|C|433

Current chains

Chain CA

16S ribosomal RNA

Nearby chains

Chain CD

30S RIBOSOMAL PROTEIN S4