IL_4V5C_185

3D structure

PDB id

4V5C (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the Thermus thermophilus 70S ribosome in complex with mRNA, paromomycin, acylated A-site tRNA, deacylated P-site tRNA, and E-site tRNA.

Experimental method

X-RAY DIFFRACTION

Resolution

3.3 Å

Loop

Sequence

CGGCCAAC*GG

Length

10 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_4V5C_185 not in the Motif Atlas

Homologous match to IL_5J7L_024

Geometric discrepancy: 0.0798

The information below is about IL_5J7L_024

Detailed Annotation

SSU/LSU pseudoknot

Broad Annotation

No text annotation

Motif group

IL_41203.4

Basepair signature

cWW-L-cWW-L-L-R-cSH

Number of instances in this motif group

11

Unit IDs

4V5C|1|CA|C|504
4V5C|1|CA|G|505
4V5C|1|CA|G|506
4V5C|1|CA|C|507
4V5C|1|CA|C|508
4V5C|1|CA|A|509
4V5C|1|CA|A|510
4V5C|1|CA|C|511
*
4V5C|1|CA|G|540
4V5C|1|CA|G|541

Current chains

Chain CA

16S ribosomal RNA

Nearby chains

Chain CD

30S RIBOSOMAL PROTEIN S4

Chain CL

30S RIBOSOMAL PROTEIN S12