IL_4V5C_198

3D structure

PDB id

4V5C (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the Thermus thermophilus 70S ribosome in complex with mRNA, paromomycin, acylated A-site tRNA, deacylated P-site tRNA, and E-site tRNA.

Experimental method

X-RAY DIFFRACTION

Resolution

3.3 Å

Loop

Sequence

CAAAC*GGUAG

Length

10 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_4V5C_198 not in the Motif Atlas

Homologous match to IL_4LFB_033

Geometric discrepancy: 0.1041

The information below is about IL_4LFB_033

Detailed Annotation

tSH-tHW-tHS

Broad Annotation

No text annotation

Motif group

IL_17136.7

Basepair signature

cWW-tSH-tHW-tHS-cWW

Number of instances in this motif group

14

Unit IDs

4V5C|1|CA|C|779
4V5C|1|CA|A|780
4V5C|1|CA|A|781
4V5C|1|CA|A|782
4V5C|1|CA|C|783
*
4V5C|1|CA|G|799
4V5C|1|CA|G|800
4V5C|1|CA|U|801
4V5C|1|CA|A|802
4V5C|1|CA|G|803

Current chains

Chain CA

16S ribosomal RNA

Nearby chains

Chain CK

30S RIBOSOMAL PROTEIN S11

Chain DA

Large subunit ribosomal RNA; LSU rRNA