IL_4V5C_211

3D structure

PDB id

4V5C (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the Thermus thermophilus 70S ribosome in complex with mRNA, paromomycin, acylated A-site tRNA, deacylated P-site tRNA, and E-site tRNA.

Experimental method

X-RAY DIFFRACTION

Resolution

3.3 Å

Loop

Sequence

GUUGC*GGCACUC

Length

12 nucleotides

Bulged bases

4V5C|1|CA|U|1125

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_4V5C_211 not in the Motif Atlas

Homologous match to IL_4LFB_048

Geometric discrepancy: 0.2268

The information below is about IL_4LFB_048

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_85222.1

Basepair signature

cWW-L-R-L-R-L-cWW-L-L

Number of instances in this motif group

1

Unit IDs

4V5C|1|CA|G|1124
4V5C|1|CA|U|1125
4V5C|1|CA|U|1126
4V5C|1|CA|G|1127
4V5C|1|CA|C|1128
*
4V5C|1|CA|G|1143
4V5C|1|CA|G|1144
4V5C|1|CA|C|1145
4V5C|1|CA|A|1146
4V5C|1|CA|C|1147
4V5C|1|CA|U|1148
4V5C|1|CA|C|1149

Current chains

Chain CA

16S ribosomal RNA

Nearby chains

Chain CI

30S RIBOSOMAL PROTEIN S9

Chain CJ

30S RIBOSOMAL PROTEIN S10