IL_4V5C_231

3D structure

PDB id

4V5C (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the Thermus thermophilus 70S ribosome in complex with mRNA, paromomycin, acylated A-site tRNA, deacylated P-site tRNA, and E-site tRNA.

Experimental method

X-RAY DIFFRACTION

Resolution

3.3 Å

Loop

Sequence

GC*GUC

Length

5 nucleotides

Bulged bases

4V5C|1|DA|U|271|||N

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_4V5C_231 not in the Motif Atlas

Homologous match to IL_7RQB_008

Geometric discrepancy: 0.4688

The information below is about IL_7RQB_008

Detailed Annotation

Single bulged U

Broad Annotation

No text annotation

Motif group

IL_83039.16

Basepair signature

cWW-L-cWW

Number of instances in this motif group

116

Unit IDs

4V5C|1|DA|G|271|||I
4V5C|1|DA|C|271|||J
*
4V5C|1|DA|G|271|||M
4V5C|1|DA|U|271|||N
4V5C|1|DA|C|271|||O

Current chains

Chain DA

23S Ribosomal RNA

Nearby chains

Chain D1

50S RIBOSOMAL PROTEIN L28

Chain DI

50S RIBOSOMAL PROTEIN L9