IL_4V5C_241

3D structure

PDB id

4V5C (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the Thermus thermophilus 70S ribosome in complex with mRNA, paromomycin, acylated A-site tRNA, deacylated P-site tRNA, and E-site tRNA.

Experimental method

X-RAY DIFFRACTION

Resolution

3.3 Å

Loop

Sequence

GAAAC*GAGAUAGC

Length

13 nucleotides

Bulged bases

4V5C|1|DA|G|801, 4V5C|1|DA|G|805

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_4V5C_241 not in the Motif Atlas

Homologous match to IL_4WF9_021

Geometric discrepancy: 0.0713

The information below is about IL_4WF9_021

Detailed Annotation

tHW-tHW cross-strand stack

Broad Annotation

No text annotation

Motif group

IL_54041.2

Basepair signature

cWW-L-R-L-R-tWH-L-cWW

Number of instances in this motif group

7

Unit IDs

4V5C|1|DA|G|674
4V5C|1|DA|A|675
4V5C|1|DA|A|676
4V5C|1|DA|A|677
4V5C|1|DA|C|678
*
4V5C|1|DA|G|799
4V5C|1|DA|A|800
4V5C|1|DA|G|801
4V5C|1|DA|A|802
4V5C|1|DA|U|803
4V5C|1|DA|A|804
4V5C|1|DA|G|805
4V5C|1|DA|C|806

Current chains

Chain DA

23S Ribosomal RNA

Nearby chains

Chain DF

50S RIBOSOMAL PROTEIN L4

Chain DP

50S RIBOSOMAL PROTEIN L15