IL_4V5C_248

3D structure

PDB id

4V5C (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the Thermus thermophilus 70S ribosome in complex with mRNA, paromomycin, acylated A-site tRNA, deacylated P-site tRNA, and E-site tRNA.

Experimental method

X-RAY DIFFRACTION

Resolution

3.3 Å

Loop

Sequence

CGC*GGAG

Length

7 nucleotides

Bulged bases

4V5C|1|DA|G|932

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_4V5C_248 not in the Motif Atlas

Geometric match to IL_7RQB_025

Geometric discrepancy: 0.2883

The information below is about IL_7RQB_025

Detailed Annotation

Intercalated cWW

Broad Annotation

Intercalated cWW

Motif group

IL_52767.4

Basepair signature

cWW-L-R-cWW

Number of instances in this motif group

28

Unit IDs

4V5C|1|DA|C|844
4V5C|1|DA|G|845
4V5C|1|DA|C|846
*
4V5C|1|DA|G|931
4V5C|1|DA|G|932
4V5C|1|DA|A|933
4V5C|1|DA|G|934

Current chains

Chain DA

23S Ribosomal RNA

Nearby chains

Chain D3

50S RIBOSOMAL PROTEIN L30