IL_4V5C_249

3D structure

PDB id

4V5C (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the Thermus thermophilus 70S ribosome in complex with mRNA, paromomycin, acylated A-site tRNA, deacylated P-site tRNA, and E-site tRNA.

Experimental method

X-RAY DIFFRACTION

Resolution

3.3 Å

Loop

Sequence

CUGAC*GGUG

Length

9 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_4V5C_249 not in the Motif Atlas

Homologous match to IL_7RQB_026

Geometric discrepancy: 0.1372

The information below is about IL_7RQB_026

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_94165.1

Basepair signature

cWW-L-R-L-tHS-cWW

Number of instances in this motif group

1

Unit IDs

4V5C|1|DA|C|846
4V5C|1|DA|U|847
4V5C|1|DA|G|848
4V5C|1|DA|A|849
4V5C|1|DA|C|850
*
4V5C|1|DA|G|927
4V5C|1|DA|G|928
4V5C|1|DA|U|930
4V5C|1|DA|G|931

Current chains

Chain DA

23S Ribosomal RNA

Nearby chains

Chain D3

50S RIBOSOMAL PROTEIN L30