IL_4V5C_264

3D structure

PDB id

4V5C (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the Thermus thermophilus 70S ribosome in complex with mRNA, paromomycin, acylated A-site tRNA, deacylated P-site tRNA, and E-site tRNA.

Experimental method

X-RAY DIFFRACTION

Resolution

3.3 Å

Loop

Sequence

CGU*AGUG

Length

7 nucleotides

Bulged bases

4V5C|1|DA|G|1248

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_4V5C_264 not in the Motif Atlas

Homologous match to IL_7A0S_041

Geometric discrepancy: 0.088

The information below is about IL_7A0S_041

Detailed Annotation

Isolated cWS basepair

Broad Annotation

No text annotation

Motif group

IL_42997.3

Basepair signature

cWW-L-R-cWW

Number of instances in this motif group

20

Unit IDs

4V5C|1|DA|C|1196
4V5C|1|DA|G|1197
4V5C|1|DA|U|1198
*
4V5C|1|DA|A|1247
4V5C|1|DA|G|1248
4V5C|1|DA|U|1249
4V5C|1|DA|G|1250

Current chains

Chain DA

23S Ribosomal RNA

Nearby chains

Chain DF

50S RIBOSOMAL PROTEIN L4

Chain DP

50S RIBOSOMAL PROTEIN L15

Chain DU

50S RIBOSOMAL PROTEIN L20