3D structure

PDB id
4V5C (explore in PDB, NAKB, or RNA 3D Hub)
Description
Structure of the Thermus thermophilus 70S ribosome in complex with mRNA, paromomycin, acylated A-site tRNA, deacylated P-site tRNA, and E-site tRNA.
Experimental method
X-RAY DIFFRACTION
Resolution
3.3 Å

Loop

Sequence
AGAAG*UGGU
Length
9 nucleotides
Bulged bases
None detected
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
IL_4V5C_278 not in the Motif Atlas
Homologous match to IL_7RQB_060
Geometric discrepancy: 0.1185
The information below is about IL_7RQB_060
Detailed Annotation
UAA/GAN
Broad Annotation
No text annotation
Motif group
IL_07235.1
Basepair signature
cWW-tSH-L-tHS-cWW
Number of instances in this motif group
8

Unit IDs

4V5C|1|DA|A|1469
4V5C|1|DA|G|1470
4V5C|1|DA|A|1471
4V5C|1|DA|A|1472
4V5C|1|DA|G|1473
*
4V5C|1|DA|U|1518
4V5C|1|DA|G|1519
4V5C|1|DA|G|1520
4V5C|1|DA|U|1523

Current chains

Chain DA
23S Ribosomal RNA

Nearby chains

No other chains within 10Å

Coloring options:


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