IL_4V5C_282

3D structure

PDB id

4V5C (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the Thermus thermophilus 70S ribosome in complex with mRNA, paromomycin, acylated A-site tRNA, deacylated P-site tRNA, and E-site tRNA.

Experimental method

X-RAY DIFFRACTION

Resolution

3.3 Å

Loop

Sequence

CAA*UCG

Length

6 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_4V5C_282 not in the Motif Atlas

Homologous match to IL_7RQB_065

Geometric discrepancy: 0.0649

The information below is about IL_7RQB_065

Detailed Annotation

Isolated tWW turn

Broad Annotation

No text annotation

Motif group

IL_54997.7

Basepair signature

cWW-tWW-cWW

Number of instances in this motif group

8

Unit IDs

4V5C|1|DA|C|1663
4V5C|1|DA|A|1664
4V5C|1|DA|A|1665
*
4V5C|1|DA|U|1995
4V5C|1|DA|C|1996
4V5C|1|DA|G|1997

Current chains

Chain DA

23S Ribosomal RNA

Nearby chains

Chain DE

50S RIBOSOMAL PROTEIN L3

Chain DO

50S RIBOSOMAL PROTEIN L14

Chain DT

50S RIBOSOMAL PROTEIN L19