IL_4V5C_298
3D structure
- PDB id
- 4V5C (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Structure of the Thermus thermophilus 70S ribosome in complex with mRNA, paromomycin, acylated A-site tRNA, deacylated P-site tRNA, and E-site tRNA.
- Experimental method
- X-RAY DIFFRACTION
- Resolution
- 3.3 Å
Loop
- Sequence
- GA*UACC
- Length
- 6 nucleotides
- Bulged bases
- 4V5C|1|DA|A|2439
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_4V5C_298 not in the Motif Atlas
- Homologous match to IL_5J7L_324
- Geometric discrepancy: 0.069
- The information below is about IL_5J7L_324
- Detailed Annotation
- Minor groove platform
- Broad Annotation
- No text annotation
- Motif group
- IL_51454.3
- Basepair signature
- cWW-cSH-cWW
- Number of instances in this motif group
- 45
Unit IDs
4V5C|1|DA|G|2070
4V5C|1|DA|A|2071
*
4V5C|1|DA|U|2438
4V5C|1|DA|A|2439
4V5C|1|DA|C|2440
4V5C|1|DA|C|2441
Current chains
- Chain DA
- 23S Ribosomal RNA
Nearby chains
- Chain CV
- Transfer RNA; tRNA
- Chain DD
- 50S RIBOSOMAL PROTEIN L2
Coloring options: