IL_4V5C_337
3D structure
- PDB id
- 4V5C (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Structure of the Thermus thermophilus 70S ribosome in complex with mRNA, paromomycin, acylated A-site tRNA, deacylated P-site tRNA, and E-site tRNA.
- Experimental method
- X-RAY DIFFRACTION
- Resolution
- 3.3 Å
Loop
- Sequence
- UGCAUGG*UCAGCAUG
- Length
- 15 nucleotides
- Bulged bases
- 4V5C|1|AA|C|1054, 4V5C|1|AA|A|1201
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_4V5C_337 not in the Motif Atlas
- Geometric match to IL_4V88_510
- Geometric discrepancy: 0.1497
- The information below is about IL_4V88_510
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- IL_62984.1
- Basepair signature
- cWW-tHS-tWH-cWH-cWW-L-L-cWW
- Number of instances in this motif group
- 1
Unit IDs
4V5C|1|AA|U|1052
4V5C|1|AA|G|1053
4V5C|1|AA|C|1054
4V5C|1|AA|A|1055
4V5C|1|AA|U|1056
4V5C|1|AA|G|1057
4V5C|1|AA|G|1058
*
4V5C|1|AA|U|1199
4V5C|1|AA|C|1200
4V5C|1|AA|A|1201
4V5C|1|AA|G|1202
4V5C|1|AA|C|1203
4V5C|1|AA|A|1204
4V5C|1|AA|U|1205
4V5C|1|AA|G|1206
Current chains
- Chain AA
- 16S ribosomal RNA
Nearby chains
- Chain AC
- 30S RIBOSOMAL PROTEIN S3
- Chain AJ
- 30S RIBOSOMAL PROTEIN S10
- Chain AN
- 30S RIBOSOMAL PROTEIN S14
- Chain AX
- MRNA
- Chain AY
- Transfer RNA; tRNA
Coloring options: