IL_4V5C_347

3D structure

PDB id

4V5C (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the Thermus thermophilus 70S ribosome in complex with mRNA, paromomycin, acylated A-site tRNA, deacylated P-site tRNA, and E-site tRNA.

Experimental method

X-RAY DIFFRACTION

Resolution

3.3 Å

Loop

Sequence

CCCG*UGUG

Length

8 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_4V5C_347 not in the Motif Atlas

Geometric match to IL_4K27_001

Geometric discrepancy: 0.2177

The information below is about IL_4K27_001

Detailed Annotation

Tandem non-canonical cWW pairs

Broad Annotation

No text annotation

Motif group

IL_15225.2

Basepair signature

cWW-cWW-cWW-cWW

Number of instances in this motif group

39

Unit IDs

4V5C|1|CA|C|186
4V5C|1|CA|C|187
4V5C|1|CA|C|188
4V5C|1|CA|G|189
*
4V5C|1|CA|U|189|||K
4V5C|1|CA|G|189|||L
4V5C|1|CA|U|190
4V5C|1|CA|G|191

Current chains

Chain CA

16S ribosomal RNA

Nearby chains

Chain CT

30S RIBOSOMAL PROTEIN S20