IL_4V5C_365

3D structure

PDB id

4V5C (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the Thermus thermophilus 70S ribosome in complex with mRNA, paromomycin, acylated A-site tRNA, deacylated P-site tRNA, and E-site tRNA.

Experimental method

X-RAY DIFFRACTION

Resolution

3.3 Å

Loop

Sequence

CCCG*CGGG

Length

8 nucleotides

Bulged bases

None detected

QA status

Self-complementary:

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_4V5C_365 not in the Motif Atlas

Homologous match to IL_4WSM_371

Geometric discrepancy: 0.5789

The information below is about IL_4WSM_371

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

4V5C|1|AY|C|2
4V5C|1|AY|C|3
4V5C|1|AY|C|4
4V5C|1|AY|G|5
*
4V5C|1|AY|C|68
4V5C|1|AY|G|69
4V5C|1|AY|G|70
4V5C|1|AY|G|71

Current chains

Chain AY

A-SITE PHE-TRNA PHE

Nearby chains

Chain AV

Transfer RNA; tRNA

Chain BA

Large subunit ribosomal RNA; LSU rRNA