IL_4V5C_366

3D structure

PDB id

4V5C (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the Thermus thermophilus 70S ribosome in complex with mRNA, paromomycin, acylated A-site tRNA, deacylated P-site tRNA, and E-site tRNA.

Experimental method

X-RAY DIFFRACTION

Resolution

3.3 Å

Loop

Sequence

UCGGCCGAAU*AUAGGUGA

Length

18 nucleotides

Bulged bases

4V5C|1|BA|G|275, 4V5C|1|BA|A|283

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

4V5C|1|BA|U|272|||I
4V5C|1|BA|C|272|||J
4V5C|1|BA|G|274
4V5C|1|BA|G|275
4V5C|1|BA|C|279
4V5C|1|BA|C|280
4V5C|1|BA|G|281
4V5C|1|BA|A|282
4V5C|1|BA|A|283
4V5C|1|BA|U|284
*
4V5C|1|BA|A|357
4V5C|1|BA|U|358
4V5C|1|BA|A|359
4V5C|1|BA|G|360
4V5C|1|BA|G|361
4V5C|1|BA|U|362
4V5C|1|BA|G|363
4V5C|1|BA|A|363|||A

Current chains

Chain BA

23S Ribosomal RNA

Nearby chains