IL_4V5C_375

3D structure

PDB id

4V5C (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the Thermus thermophilus 70S ribosome in complex with mRNA, paromomycin, acylated A-site tRNA, deacylated P-site tRNA, and E-site tRNA.

Experimental method

X-RAY DIFFRACTION

Resolution

3.3 Å

Loop

Sequence

CUGUGAAC*GGGAG

Length

13 nucleotides

Bulged bases

4V5C|1|DA|U|2132

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_4V5C_375 not in the Motif Atlas

Homologous match to IL_5J7L_330

Geometric discrepancy: 0.3792

The information below is about IL_5J7L_330

Detailed Annotation

Kink-turn

Broad Annotation

No text annotation

Motif group

IL_70923.9

Basepair signature

cWW-tSS-tSH-L-tHS-tHS-cWW

Number of instances in this motif group

27

Unit IDs

4V5C|1|DA|C|2129
4V5C|1|DA|U|2130
4V5C|1|DA|G|2131
4V5C|1|DA|U|2132
4V5C|1|DA|G|2133
4V5C|1|DA|A|2134
4V5C|1|DA|A|2135
4V5C|1|DA|C|2136
*
4V5C|1|DA|G|2155
4V5C|1|DA|G|2156
4V5C|1|DA|G|2157
4V5C|1|DA|A|2158
4V5C|1|DA|G|2159

Current chains

Chain DA

23S Ribosomal RNA

Nearby chains

Chain AA

Small subunit ribosomal RNA; SSU rRNA

Chain DC

50S RIBOSOMAL PROTEIN L1