IL_4V5D_017

3D structure

PDB id

4V5D (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the Thermus thermophilus 70S ribosome in complex with mRNA, paromomycin, acylated A- and P-site tRNAs, and E-site tRNA.

Experimental method

X-RAY DIFFRACTION

Resolution

3.5 Å

Loop

Sequence

GGAAGAAG*UGUAAAC

Length

15 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_4V5D_017 not in the Motif Atlas

Homologous match to IL_4LFB_017

Geometric discrepancy: 0.1046

The information below is about IL_4LFB_017

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_28026.3

Basepair signature

cWW-tSH-tWH-cWH-L-tHW-tSS-tHH-cWW

Number of instances in this motif group

2

Unit IDs

4V5D|1|AA|G|409
4V5D|1|AA|G|410
4V5D|1|AA|A|411
4V5D|1|AA|A|412
4V5D|1|AA|G|413
4V5D|1|AA|A|414
4V5D|1|AA|A|415
4V5D|1|AA|G|416
*
4V5D|1|AA|U|427
4V5D|1|AA|G|428
4V5D|1|AA|U|429
4V5D|1|AA|A|430
4V5D|1|AA|A|431
4V5D|1|AA|A|432
4V5D|1|AA|C|433

Current chains

Chain AA

16S ribosomal RNA

Nearby chains

Chain AD

30S RIBOSOMAL PROTEIN S4