3D structure

PDB id
4V5D (explore in PDB, NAKB, or RNA 3D Hub)
Description
Structure of the Thermus thermophilus 70S ribosome in complex with mRNA, paromomycin, acylated A- and P-site tRNAs, and E-site tRNA.
Experimental method
X-RAY DIFFRACTION
Resolution
3.5 Å

Loop

Sequence
GGAAGAAG*UGUAAAC
Length
15 nucleotides
Bulged bases
None detected
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
IL_4V5D_017 not in the Motif Atlas
Homologous match to IL_4LFB_017
Geometric discrepancy: 0.1046
The information below is about IL_4LFB_017
Detailed Annotation
No text annotation
Broad Annotation
No text annotation
Motif group
IL_28026.3
Basepair signature
cWW-tSH-tWH-cWH-L-tHW-tSS-tHH-cWW
Number of instances in this motif group
2

Unit IDs

4V5D|1|AA|G|409
4V5D|1|AA|G|410
4V5D|1|AA|A|411
4V5D|1|AA|A|412
4V5D|1|AA|G|413
4V5D|1|AA|A|414
4V5D|1|AA|A|415
4V5D|1|AA|G|416
*
4V5D|1|AA|U|427
4V5D|1|AA|G|428
4V5D|1|AA|U|429
4V5D|1|AA|A|430
4V5D|1|AA|A|431
4V5D|1|AA|A|432
4V5D|1|AA|C|433

Current chains

Chain AA
16S ribosomal RNA

Nearby chains

Chain AD
30S RIBOSOMAL PROTEIN S4

Coloring options:


Copyright 2025 BGSU RNA group. Page generated in 0.1436 s