IL_4V5D_021

3D structure

PDB id

4V5D (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the Thermus thermophilus 70S ribosome in complex with mRNA, paromomycin, acylated A- and P-site tRNAs, and E-site tRNA.

Experimental method

X-RAY DIFFRACTION

Resolution

3.5 Å

Loop

Sequence

CGUGCCAG*CGGUAAUACG

Length

18 nucleotides

Bulged bases

4V5D|1|AA|A|532, 4V5D|1|AA|U|534, 4V5D|1|AA|A|535

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

4V5D|1|AA|C|514
4V5D|1|AA|G|515
4V5D|1|AA|U|516
4V5D|1|AA|G|517
4V5D|1|AA|C|518
4V5D|1|AA|C|519
4V5D|1|AA|A|520
4V5D|1|AA|G|521
*
4V5D|1|AA|C|528
4V5D|1|AA|G|529
4V5D|1|AA|G|530
4V5D|1|AA|U|531
4V5D|1|AA|A|532
4V5D|1|AA|A|533
4V5D|1|AA|U|534
4V5D|1|AA|A|535
4V5D|1|AA|C|536
4V5D|1|AA|G|537

Current chains

Chain AA

16S ribosomal RNA

Nearby chains

Chain AC

30S RIBOSOMAL PROTEIN S3

Chain AD

30S RIBOSOMAL PROTEIN S4

Chain AL

30S RIBOSOMAL PROTEIN S12

Chain AX

MRNA

Chain AY

Transfer RNA; tRNA